Module asymmetree.analysis

# -*- coding: utf-8 -*-

"""Extraction and analysis of orthology, xenology, best matches, ...
"""

from asymmetree.analysis.BestMatches import (orthology_from_tree,
                                             bmg_from_tree,
                                             extended_best_hits,
                                             is_bmg,
                                             lrt_from_tree,
                                             lrt_from_colored_graph,
                                             binary_refinable_tree,
                                             augment_and_label,)

from asymmetree.analysis.HGT import (true_transfer_edges,
                                     rs_transfer_edges,
                                     fitch,
                                     undirected_fitch,
                                     is_rs_fitch,
                                     below_equal_above,
                                     ldt_graph,
                                     RsScenarioConstructor)